Punning with the Pub in PubMed: Are there any decent NCBI puns left? #PubMedPuns | O'Really?
Filed under: data mining , Googleology , paperware , publishing , Science , technology hepatitis b — Duncan Hull @ 10:31 am Tags: Casey Bergman hepatitis b , defrosting , Elizabeth Gibney , gastropub , google scholar , Johanna McEntyre , Karsten Hokamp , Ken Wolfe , Leo Chalupa , Mark Gerstein , Phil Bourne , portmanteau , pubbit , Pubble , PubBrawl , pubby , PubCast , pubchase , pubclean , PubCrawl , pubcrawler , pubfetch , PubFig , PubFight , pubgames , publican , PubLick , publunch , Publy , PubManteau , PubMatch , pubmed , PubMedication , PubMine , pubnet , pubpeer , PubQuiz , PubSCIENCE , pubsearch , PubSnacks , PubSnax , PubSoft , PubSort , Pubsy , Richard van Noorden , RSS , text mining , twitter , twitterbot
Many people claim they get all their best ideas in the pub, but for lots of scientists their best ideas probably come from PubMed.gov – the NCBI’s monster database of biomedical literature. Consequently, the database has spawned a whole slew of tools that riff off the PubMed name, with many puns and portmanteaus (aka PubManteaus ), and the pub-based wordplays are very common. [1,2]
All of this might make you wonder, are there any decent PubMed puns left? Here’s an incomplete collection: PubCrawler pubcrawler.ie goes to the library while you go to the pub… [3,4] PubChase pubchase.com is a life sciences and medical literature recommendations engine. Search smarter, organize, and discover the articles most important to you. [5] PubCast scivee.tv/pubcasts allow users to enliven articles and help drive more views (to PubMed) [6] PubFig nothing to do with PubMed, but research done on face and image recognition that happens to be indexed by PubMed. [7] PubGet pubget.com is a comprehensive source for science PDFs, including everything you’d find in Medline. [8] PubMine supports intelligent knowledge discovery [9] PubNet pubnet.gersteinlab.org is a web-based tool that extracts several types of relationships returned hepatitis b by PubMed queries and maps them into networks aka a publication network graph utility. [10] GastroPub repackages and re-sells ordinary PubMed content disguised as high-end luxury data at a higher premium, similar to a Gastropub . PubQuiz is either the new name for NCBI database search www.ncbi.nlm.nih.gov/gquery or a quiz where you’re only allowed to use PubMed hepatitis b to answer questions. PubSearch & PubFetch allows hepatitis b users to store literature, keyword, and gene information in a relational hepatitis b database, index the literature with keywords and gene names, and provide hepatitis b a Web user interface for annotating the genes from experimental data found in the associated literature [11] PubScience is either “peer-reviewed drinking” courtesy of pubsci.co.uk or an ambitious publishing project tragically axed by the U.S. Department of Energy (DoE). [12,13] PubSub is anything that makes use of the publish subscribe hepatitis b pattern , such as NCBI feeds . [14] PubLick as far as I can see, hasn’t been used yet, unless you count this @publick on twitter . If anyone was launching a startup, working in the area of licking the tastiest data out of PubMed, that could be a great name for their data-mining business. Alternatively, it could be a catchy new nickname hepatitis b for PubMedCentral (PMC) or Europe PubMedCentral (EuropePMC) [15] – names which don’t exactly trip off the tongue. Since PMC is a free digital archive of publicly accessible full-text scholarly articles, PubLick seems like a appropriate moniker.
There’s probably lots more PubMed puns and portmanteaus out there just waiting hepatitis b to be used. Pubby, Pubsy, PubLican, Pubble, Pubbit, hepatitis b Publy, PubSoft, PubSort, PubBrawl, hepatitis b PubMatch, PubGames, PubGuide, PubWisdom, PubTalk, PubChat, PubShare, PubGrub, PubSnacks and PubLunch could all work. If you’ve know of any other decent (or dodgy) PubMed puns, leave them in the comments below and go and build a scientific twitterbot or cool tool using the same name if you haven’t already. References Lu Z. (2011). PubMed and beyond: a survey of web tools for searching biomedical literature., Database: The Journal of Biological Databases hepatitis b and Curation, hepatitis b http://pubmed.gov/21245076 Hull D., Pettifer S.R. & Kell D.B. (2008). Defrosting the digital hepatitis b library: bibliographic tools for the next generation web., PLOS Computational Biology, PMID: http://pubmed.gov/18974831 Hokamp K. & Wolfe K.H. (2004) PubCrawler: keeping up comfortably with PubMed hepatitis b and GenBank., Nucleic acids research, http://pubmed.gov/15215341 Hokamp K. & Wolfe K. (1999) What’s new in the library? What’s hepatitis b new in GenBank? let PubCrawler tell you., Trends in Genetics, http://pubmed.gov/10529811 Gibney E. (2014). How to tame the flood of literature., Nature, 513 (7516) http://pubmed.gov/25186906 Bourne P. & Chalupa L. (2008). A new approach to scientific dissemination, Materials
Filed under: data mining , Googleology , paperware , publishing , Science , technology hepatitis b — Duncan Hull @ 10:31 am Tags: Casey Bergman hepatitis b , defrosting , Elizabeth Gibney , gastropub , google scholar , Johanna McEntyre , Karsten Hokamp , Ken Wolfe , Leo Chalupa , Mark Gerstein , Phil Bourne , portmanteau , pubbit , Pubble , PubBrawl , pubby , PubCast , pubchase , pubclean , PubCrawl , pubcrawler , pubfetch , PubFig , PubFight , pubgames , publican , PubLick , publunch , Publy , PubManteau , PubMatch , pubmed , PubMedication , PubMine , pubnet , pubpeer , PubQuiz , PubSCIENCE , pubsearch , PubSnacks , PubSnax , PubSoft , PubSort , Pubsy , Richard van Noorden , RSS , text mining , twitter , twitterbot
Many people claim they get all their best ideas in the pub, but for lots of scientists their best ideas probably come from PubMed.gov – the NCBI’s monster database of biomedical literature. Consequently, the database has spawned a whole slew of tools that riff off the PubMed name, with many puns and portmanteaus (aka PubManteaus ), and the pub-based wordplays are very common. [1,2]
All of this might make you wonder, are there any decent PubMed puns left? Here’s an incomplete collection: PubCrawler pubcrawler.ie goes to the library while you go to the pub… [3,4] PubChase pubchase.com is a life sciences and medical literature recommendations engine. Search smarter, organize, and discover the articles most important to you. [5] PubCast scivee.tv/pubcasts allow users to enliven articles and help drive more views (to PubMed) [6] PubFig nothing to do with PubMed, but research done on face and image recognition that happens to be indexed by PubMed. [7] PubGet pubget.com is a comprehensive source for science PDFs, including everything you’d find in Medline. [8] PubMine supports intelligent knowledge discovery [9] PubNet pubnet.gersteinlab.org is a web-based tool that extracts several types of relationships returned hepatitis b by PubMed queries and maps them into networks aka a publication network graph utility. [10] GastroPub repackages and re-sells ordinary PubMed content disguised as high-end luxury data at a higher premium, similar to a Gastropub . PubQuiz is either the new name for NCBI database search www.ncbi.nlm.nih.gov/gquery or a quiz where you’re only allowed to use PubMed hepatitis b to answer questions. PubSearch & PubFetch allows hepatitis b users to store literature, keyword, and gene information in a relational hepatitis b database, index the literature with keywords and gene names, and provide hepatitis b a Web user interface for annotating the genes from experimental data found in the associated literature [11] PubScience is either “peer-reviewed drinking” courtesy of pubsci.co.uk or an ambitious publishing project tragically axed by the U.S. Department of Energy (DoE). [12,13] PubSub is anything that makes use of the publish subscribe hepatitis b pattern , such as NCBI feeds . [14] PubLick as far as I can see, hasn’t been used yet, unless you count this @publick on twitter . If anyone was launching a startup, working in the area of licking the tastiest data out of PubMed, that could be a great name for their data-mining business. Alternatively, it could be a catchy new nickname hepatitis b for PubMedCentral (PMC) or Europe PubMedCentral (EuropePMC) [15] – names which don’t exactly trip off the tongue. Since PMC is a free digital archive of publicly accessible full-text scholarly articles, PubLick seems like a appropriate moniker.
There’s probably lots more PubMed puns and portmanteaus out there just waiting hepatitis b to be used. Pubby, Pubsy, PubLican, Pubble, Pubbit, hepatitis b Publy, PubSoft, PubSort, PubBrawl, hepatitis b PubMatch, PubGames, PubGuide, PubWisdom, PubTalk, PubChat, PubShare, PubGrub, PubSnacks and PubLunch could all work. If you’ve know of any other decent (or dodgy) PubMed puns, leave them in the comments below and go and build a scientific twitterbot or cool tool using the same name if you haven’t already. References Lu Z. (2011). PubMed and beyond: a survey of web tools for searching biomedical literature., Database: The Journal of Biological Databases hepatitis b and Curation, hepatitis b http://pubmed.gov/21245076 Hull D., Pettifer S.R. & Kell D.B. (2008). Defrosting the digital hepatitis b library: bibliographic tools for the next generation web., PLOS Computational Biology, PMID: http://pubmed.gov/18974831 Hokamp K. & Wolfe K.H. (2004) PubCrawler: keeping up comfortably with PubMed hepatitis b and GenBank., Nucleic acids research, http://pubmed.gov/15215341 Hokamp K. & Wolfe K. (1999) What’s new in the library? What’s hepatitis b new in GenBank? let PubCrawler tell you., Trends in Genetics, http://pubmed.gov/10529811 Gibney E. (2014). How to tame the flood of literature., Nature, 513 (7516) http://pubmed.gov/25186906 Bourne P. & Chalupa L. (2008). A new approach to scientific dissemination, Materials
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